PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789344.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 757aa    MW: 86649.6 Da    PI: 6.5374
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.31.7e-2059152190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak+ GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnHel 
  XP_009789344.1  59 EFYCSFAKQSGFSIRRHRTRGKdGIGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVKRAdfnVPEWRITGFSNVHNHELL 152
                     6***************999877456677********************9*******************98887676789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-1859152IPR004330FAR1 DNA binding domain
PfamPF105516.2E-22275366IPR018289MULE transposase domain
PROSITE profilePS5096610.188551587IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-8552585IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPEITSIAKE ISENRTDSSQ DDIGTVEEMP EDAILSRQTS VNLVPFIGQI FVSQDAAYEF  60
YCSFAKQSGF SIRRHRTRGK DGIGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLL PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL TELEKGVKLG CLPFTEVDVR NLLLSFRNVE QDNDPIDLLK MCKEMKDKDP  240
NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG  300
THCFFGCVLL RDENLQSFSW ALKTFLGFMN GKASGTILTD QNLWLKEAIA TEIPRAKHAF  360
CIWHIISRFS DWFSTFLGSQ YDNWKVEFHR LYKLHSIEEY EVGWNEMVET YKLDENKHIV  420
SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRILS VQSVLDNFVE QIARVVGAKD  480
QAGGTHKVQR NVQKIPLKTG SPIESHAATV LTPYAFSKLQ EELVLAPQYA SLMVDDSYFI  540
VRHHTEMDGG YKVLWVPHEE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW  600
RECSSSLAKP AIFSLPSDNT GKIQLLHSMI STLITESVET EERLNVVCEE VSTVLSRIKG  660
FPTTSNGGNT IAYESPSDSL ILAEVEDSDG IGQSFACNPH EYINLEKLKE RGSRDGLDLY  720
RKRRHLSVLC CGQYGHDASD CPMMEGEDLN ADRLRFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789344.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLK4CVE10.0K4CVE1_SOLLC; Uncharacterized protein
STRINGSolyc09g075640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11